Method and device for detecting a component in a sample

ABSTRACT

The present disclosure provides a biosensor for detecting the presence of and/or the amount of at least one fungal plant pathogen in a sample, comprising: a support structure; at least two interdigitated electrodes coupled to the support structure, wherein at least one of the interdigitated electrodes is functionalized with a linker coupled to at least one biological component that recognizes the at least one fungal plant pathogen; and an impedance measurement circuit coupled to the at least two interdigitated electrodes. The present disclosure also provides methods of detecting the presence of and/or the amount of at least one fungal plant pathogen in a sample, methods of making the biosensor described herein, as well as methods and uses of using the herein described biosensor for detecting the presence of and/or amount of at least one fungal plant pathogen.

CROSS REFERENCE TO RELATED APPLICATIONS

This application is a continuation of U.S. patent application Ser. No.16/395,062, filed on Apr. 25, 2019 and claims the benefit of priority ofU.S. Provisional Patent Application No. 62/663,959 filed on Apr. 27,2018, which is incorporated herein by reference.

FIELD

The present disclosure relates to a method and immuno-impedimetricbiosensor for detecting a plant pathogen in a sample.

BACKGROUND

The following paragraphs are not an admission that anything discussed inthem is prior art or part of the knowledge of persons skilled in theart.

Plant diseases have significant impacts on crop quality and yield andhave caused famine and economic losses. Over eighty percent of plantdiseases are caused by fungi. Fungi are the number one cause of croploss worldwide. The most well-known plant diseases caused by fungalpathogens are fusarium head blight of wheat and barley, black stem rustand leaf rust of wheat, sclerotinia stem rot and blackleg of canola,leaf blight of corn, ergot of sorghum, late blight of potato, fusariumwilts of cotton and flax, powdery and downy mildews of grape etc. Fungispread from one plant to another and from one location to another inseveral ways. Most pathogens produce spores, either through asexual orsexual reproduction, that aid in the dissemination of the fungi. Thesespores may be moved by wind, insects, or water. Plant fungal pathogenscause tissue decay and eventual death of the plant. In addition todestroying plant tissue directly, some plant pathogens spoil crops byproducing potent toxins.

The primary tool used to control fungal disease spread is theapplication of fungicides [1]. In order to be effective, foliarfungicides need to be applied during the key stage of infection, thatis, early flowering and before the appearance of symptoms in the crops.Systematic application of fungicides may be unprofitable because theoutbreak of plant disease can vary greatly among fields and years.

A number of forecasting systems have been developed to predict the riskof fungal plant disease. The methodology adopted for risk assessmentincludes recording the amount of continuous rainfall for a number ofdays, soil moisture and apothecium development, temperature, crop canopydevelopment, crop rotation, and crop disease levels in the previousyears. Additional tools such as testing petals for infection caused byS. sclerotiorum ascospores and weather-based forecasting maps have beenadopted in Canada [2, 3]. However, these approaches for risk assessmentmay be time consuming, labor intensive as they require constant fieldtesting, and/or may not predict the risk in a timely manner.

INTRODUCTION

The following introduction is intended to introduce the reader to thisspecification but not to define any invention. One or more inventionsmay reside in a combination or sub-combination of the instrumentelements or method steps described below or in other parts of thisdocument. The inventors do not waive or disclaim their rights to anyinvention or inventions disclosed in this specification merely by notdescribing such other invention or inventions in the claims.

Airborne ascospores, conidiospores, aeciospores, and urediniospores arethe dominant source of the spread of infection in crop plants. Methodsand devices that can directly detect airborne ascospores and/orconidiospores may provide a more efficient measurement of the risk ofcrop infection. Quantitative real-time polymerase chain reaction (qPCR)has been developed as the method of choice for monitoring airborneascospores by amplifying a selected segment of their DNA for detectionand quantification [4, 5, 6, 7]. Although qPCR has the sensitivity andselectivity to detect the presence of pathogens to a level as low as asingle spore in the sample, it has a number of disadvantages in terms ofcost and complexity of the method due to the simultaneous requirementsof thermal cycling and fluorescence detection which may render thetechnique unsuitable for routine onsite field applications.

There remains a need for methods and devices for detecting fungal plantpathogens that are less costly, physically miniaturized, and/or morecapable of onsite field application, in comparison to one or more knownmethods and devices for detecting fungal plant pathogens.

The present disclosure provides a biosensor for detecting the presenceof and/or the amount of at least one fungal plant pathogen in a sample,comprising at least a first electrical conductor that detects the atleast one fungal plant pathogen in the sample, and at least a secondelectrical conductor coupled to the at least first electrical conductorto measure the impedance therebetween and correlate changes in impedanceto the presence of and/or amount of the at least one fungal plantpathogen in the sample.

The present disclosure also discusses methods of detecting the presenceof and/or the amount of at least one fungal plant pathogen in a sample,methods of making the biosensor described herein, as well as methods anduses of using the herein described biosensor for detecting the presenceof and/or amount of at least one fungal plant pathogen.

The present disclosure provides a biosensor for detecting the presenceof and/or the amount of at least one fungal plant pathogen in a sample,comprising: a support structure; at least two interdigitated electrodescoupled to the support structure, wherein at least one of theinterdigitated electrodes is functionalized with a linker coupled to atleast one biological component that recognizes the at least one fungalplant pathogen; and an impedance measurement circuit coupled to the atleast two interdigitated electrodes.

The at least one fungal plant pathogen may infect a canola plant, awheat plant, a barley plant, a corn plant, a rice plant, a millet plant,a sorghum plant, or a combination thereof. The at least one fungal plantpathogen may be Sclerotinia sclerotiorum, Fusarium graminearum,F.avenaceum, F. poae, F.sporotrichioedes, Puccinia graminis, Pucciniatriticina, P. recondite, P. striiformis, Erysiphe graminis f.sp.Tritici, Glomerella graminicola (anamorph Colletotrichum graminicola),Pyrenophora tritici-repentis (telomorph) and Drechsleratritici-repentis, Pyrenophora trichostoma, Urocystis agropyri,Sclerotinia borealis, Septoria spp., Stagnospora spp., Pyrenophora terestares, Pyrenophora teres maculate, Claviceps purpurea, Alternaria spp.,Heminthosporium spp, Psudocercosporella herpotrichoides, Glomerellagraminicola (anamorphic), Colletotrichum graminicola, Fusariumverticillioides, Gibberella zeae, Aspergillus flavus, A. parasiticus,Lasiodiplodia theobromae, Physoderma maydis, Exserohilum turcicum,Cochliobolus heterostrophu, Cercospora zeae-maydis and Cercosporazeinaor, Cochliobolus carbonum, Stenocarpella maydis, Puccinia polysora,Magnaporthe oryzae, Cochliobolus miyabeanus, Ascochyta oryzae,Drechslera gigantean, Microdochium albescens, Cercospora oryzae,Puccinia graminis f.sp. oryzae, Uromyces coronatus, Ramularia oryzae,Bipolaris setariae, Cercospora penniseti, Curvularia penniseti,Dactuliophora elongata, Drechslera dematioidea, Claviceps fusiformis,Exserohilum rostratum, Beniowskia sphaeroidea, Myrothecium roridum,Phyllosticta penicillariae, Pyricularia grisea, Puccinia substriata,Moesziomyces penicillariae, Sclerotium rolfsii, Fusarium moniliforme,Gleocercospora sorghi, Sarocladium strictum (syns Acremonium strictum),Cephalosporium acremonium, Macrophomina phaseolina, Claviceps africana,Sphacelia sorghi, Fusarium spp., Fusarium moniliforme (syn. Gibberellafujikuroi), F. thapsinum (syn. G. thapsina), Aspergillus spp., Fusariumandiyazi, F. nygamai, Penicillium spp., Cercospora sorghi, Passalorafusimaculans (syn. Cercospora fusimaculans), Setosphaeria turcica (syns.Exserohilum turcicum, Helminthosporium turcicum), Periconia circinata,Ramulispora sorghicola, Gibberella fujikuroi (syns. Fusarium moniliformevar. subglutinans G. fujikuroi var. subglutinans, G. intermedia, F.proliferatum), Ascochyta sorghi, Puccinia purpurea, Sclerotium rolfsii(syn. Athelia rolfsii), Ramulispora sorghi, Phyllachora sacchari,Bipolaris sorghicola (syns. B. cookei, Helminthosporium cookei.),Gloeocercospora sorghi, or a combination thereof. The at least onefungal plant pathogen may be Sclerotinia sclerotiorum. The at least onefungal plant pathogen may be the apothecia of the at least one fungalplant pathogen. The apothecia may be at least one airborne ascospore orconidiospore released from the apothecia.

The linker may be a SAM, a macromolecule, or a thin layer of polymer.The linker may be a SAM that comprises a thiol head group andoptionally, a boron functional group.

The biological component may be an antibody or fragment thereof.

The at least two interdigitated electrodes may comprise a gold surface.The fingers of a pair of interdigitated electrodes, together, may havean about square shape. The square shape may have a length of about 3 mm,a width of about 3 mm, a thickness of about 110 nm, and the gap betweenthe fingers may be about 3 μm.

The impedance measurement circuit may comprise a potentiostat.

The support structure may be a silicon wafer.

The biosensor may be a non-faradaic biosensor.

The present disclosure also provides a method of making a biosensor fordetecting the presence of and/or the amount of at least one fungal plantpathogen in a sample, comprising: contacting an interdigitated electrodewith an aqueous solution comprising a linker, the interdigitatedelectrode being in electrical communication with at least a secondinterdigitated electrode; contacting the interdigitated electrode withan aqueous solution comprising EDC and NHS; contacting theinterdigitated electrode with an aqueous solution comprising APBA; andcontacting the interdigitated electrode with a solution comprising atleast one biological component that recognizes the at least one fungalplant pathogen. The method may further comprise the step of: applying aPDMS mask to the interdigitated electrode. The linker may be is a SAM, amacromolecule, a thin layer of polymer, or 6-MHA and 11-MUA. The linkermay be a SAM that comprises a thiol head group and optionally, a boronfunctional group.

The present disclosure also provides a method of detecting the presenceof and/or the amount of at least one fungal plant pathogen in a sample,comprising: measuring the impedance of a biosensor coupled to at leastone biological component that recognizes the at least one fungal plantpathogen; contacting the sample with the biosensor; measuring theimpedance of the biosensor in contact with the sample; and correlatingthe change of impedance with the presence and/or the amount of the atleast one fungal plant pathogen in the sample. The biological componentmay be an antibody or fragment thereof.

The present disclosure also provides a method of detecting the presenceof and/or the amount of at least one fungal plant pathogen in a sample,comprising: measuring the impedance of a herein described biosensor;contacting the sample with the biosensor; measuring the impedance of thebiosensor in contact with the sample; and correlating the change ofimpedance with the presence and/or the amount of the at least one fungalplant pathogen in the sample.

The correlating step may comprise correlating the change of impedancewith a standard curve of known impedances of known amounts of the atleast one fungal plant pathogen.

The impedances may be measured by applying about 10 mV sinusoidalexcitation perturbation at 0 V DC in a frequency range from about 10 Hzto about 1 MHz.

The at least one fungal plant pathogen may infect a canola plant, awheat plant, a barley plant, a corn plant, a rice plant, a millet plant,a sorghum plant, or a combination thereof. The at least one fungal plantpathogen may be Sclerotinia sclerotiorum, Fusarium graminearum,F.avenaceum, F. poae, F. sporotrichioedes, Puccinia graminis, Pucciniatriticina, P. recondite, P. striiformis, Erysiphe graminis f.sp.Tritici, Glomerella graminicola (anamorph Colletotrichum graminicola),Pyrenophora tritici-repentis (telomorph) and Drechsleratritici-repentis, Pyrenophora trichostoma, Urocystis agropyri,Sclerotinia borealis, Septoria spp., Stagnospora spp., Pyrenophora terestares, Pyrenophora teres maculate, Claviceps purpurea, Alternaria spp.,Heminthosporium spp, Psudocercosporella herpotrichoides, Glomerellagraminicola (anamorphic), Colletotrichum graminicola, Fusariumverticillioides, Gibberella zeae, Aspergillus flavus, A. parasiticus,Lasiodiplodia theobromae, Physoderma maydis, Exserohilum turcicum,Cochliobolus heterostrophu, Cercospora zeae-maydis and Cercosporazeinaor, Cochliobolus carbonum, Stenocarpella maydis, Puccinia polysora,Magnaporthe oryzae, Cochliobolus miyabeanus, Ascochyta oryzae,Drechslera gigantean, Microdochium albescens, Cercospora oryzae,Puccinia graminis f.sp. oryzae, Uromyces coronatus, Ramularia oryzae,Bipolaris setariae, Cercospora penniseti, Curvularia penniseti,Dactuliophora elongata, Drechslera dematioidea, Claviceps fusiformis,Exserohilum rostratum, Beniowskia sphaeroidea, Myrothecium roridum,Phyllosticta penicillariae, Pyricularia grisea, Puccinia substriata,Moesziomyces penicillariae, Sclerotium rolfsii, Fusarium moniliforme,Gleocercospora sorghi, Sarocladium strictum (syns Acremonium strictum),Cephalosporium acremonium, Macrophomina phaseolina, Claviceps africana,Sphacelia sorghi, Fusarium spp., Fusarium moniliforme (syn. Gibberellafujikuroi), F. thapsinum (syn. G. thapsina), Aspergillus spp., Fusariumandiyazi, F. nygamai, Penicillium spp., Cercospora sorghi, Passalorafusimaculans (syn. Cercospora fusimaculans), Setosphaeria turcica (syns.Exserohilum turcicum, Helminthosporium turcicum), Periconia circinata,Ramulispora sorghicola, Gibberella fujikuroi (syns. Fusarium moniliformevar. subglutinans G. fujikuroi var. subglutinans, G. intermedia, F.proliferatum), Ascochyta sorghi, Puccinia purpurea, Sclerotium rolfsii(syn. Athelia Ramulispora sorghi, Phyllachora sacchari, Bipolarissorghicola (syns. B. cookei, Helminthosporium cookei.), Gloeocercosporasorghi, or a combination thereof. The at least one fungal plant pathogenmay be Sclerotinia sclerotiorum. The at least one fungal plant pathogenmay be the apothecia of the at least one fungal plant pathogen. Theapothecia may be at least one airborne ascospore or conidiosporereleased from the apothecia.

The sample may be captured in a high throughput ascospore trap.

The present disclosure also provides a use of the herein describedbiosensor for detecting the presence of and/or the amount of at leastone fungal plant pathogen in a sample. The at least one fungal plantpathogen may be Sclerotinia sclerotiorum.

The presently disclosed biosensors and methods may be amenable tomicrofabrication and physical miniaturization and therefore may lowerthe cost, decrease the size, and may be more capable of automated onsitefield monitoring to serve as an early warning system to forecast andmanage the outbreaks of fungal plant pathogen diseases, as compared toone or more known methods and devices for monitoring a fungal plantpathogen.

Other aspects and features of the present disclosure will becomeapparent to those ordinarily skilled in the art upon review of thefollowing description of specific examples in conjunction with theaccompanying figures.

BRIEF DESCRIPTION OF THE DRAWINGS

Embodiments of the present disclosure will now be described, by way ofexample only, with reference to the attached Figures.

FIG. 1 is an illustration of an example of a biosensor according to thepresent disclosure.

FIG. 2 is an illustration of a method of making a biosensor according tothe present disclosure.

FIGS. 3A-B are photographs of an example of a biosensor according to thepresent disclosure.

FIG. 4 is a graph of a plot of impedance magnitude and phase versesfrequency for IDE gold electrodes: (A) bare gold electrode beforemodification, (B) after SAM modification, and (C) after anti-Sclerotiniasclerotiorum antibody immobilization.

FIG. 5 is a graph of a plot of impedance magnitude determined at 1000 Hzfor an IDE after difference stages of surface modification.

FIGS. 6A-C are optical images of ascospores selectively captured byimmobilized anti-Sclerotinia sclerotiorum antibodies on SAM modified IDEsurface. The number of ascospores on the surfaces i.e. ascospores/cm²are (FIG. 6A) (1.1±0.1)×10⁵, (FIG. 6B) (4.4±0.4)×10⁴, and (FIG. 6C)(2.5±0.3)×10⁴. Scale bar equals 100 μm.

FIG. 7 is a graph of a plot of impedance change (ΔZ) versus ascosporeconcentration [ascospore] in the incubation solution. The black line isthe linear fit to the experimental data point (filled squares), errorbars are RSD (n=4). Where, ΔZ=Z_(Ab-Sp)-Z_(Ab), and Z_(Ab) and Z_(Ab-Sp)are the magnitudes of the impedance measured at 1000 Hz before and afterthe ascospores have been captured by the immobilized anti-Sclerotiniasclerotiorum antibodies on the surface of modified IDE.

DETAILED DESCRIPTION

Generally, the present disclosure provides for a biosensor for detectingthe presence of and/or the amount of at least one fungal plant pathogenin a sample, comprising: a support structure; at least twointerdigitated electrodes coupled to the support structure, wherein atleast one of the interdigitated electrodes is functionalized with alinker coupled to a biological component that recognizes the at leastone fungal plant pathogen; and an impedance measurement circuit coupledto the at least two interdigitated electrodes.

The present disclosure also provides a method of making a biosensor fordetecting the presence of and/or the amount of at least one fungal plantpathogen in a sample, comprising: contacting an interdigitated electrodewith an aqueous solution comprising a linker, for example,6-mercaptohexanoic acid (MHA) and 11-mercaptoundecanoic acid (MUA), theinterdigitated electrode being in electrical communication with at leasta second interdigitated electrode; contacting the interdigitatedelectrode with an aqueous solution comprising1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) andN-hydroxysuccinimide (NHS); contacting the interdigitated electrode withan aqueous solution comprising 3-aminophenylboronic acid (APBA); andcontacting the interdigitated electrode with a solution comprising abiological component that recognizes the at least one fungal plantpathogen. In some examples according to the present disclosure, themethod further comprises applying a polydimethylsiloxane (PDMS) mask tothe interdigitated electrode.

The present disclosure further provides a method of detecting thepresence of and/or the amount of at least one fungal plant pathogen in asample, comprising: measuring the impedance of a biosensor coupled to abiological component that recognizes the at least one fungal plantpathogen; contacting the sample with the biosensor; measuring theimpedance of the biosensor in contact with the sample; and correlatingthe change of impedance with the presence and/or the amount of the atleast one fungal plant pathogen in the sample.

The present disclosure further provides a method of detecting thepresence of and/or the amount of at least one fungal plant pathogen in asample, comprising: measuring the impedance of a biosensor as presentlydisclosed; contacting the sample with the biosensor; measuring theimpedance of the biosensor in contact with the sample; and correlatingthe change of impedance with the presence and/or the amount of the atleast one fungal plant pathogen in the sample.

The present disclosure further provides a use of a biosensor aspresently disclosed for detecting the presence of and/or the amount ofat least one fungal plant pathogen in a sample.

The biosensor may be any device that combines a biological componentcapable of interacting with, binding, and/or recognizing at least onefungal plant pathogen in a sample with a physiochemical sensor capableof measuring impedance.

The at least one fungal plant pathogen may be any pathogen that infectsa crop plant, for example, a canola plant, a wheat plant, a barleyplant, a corn plant, a rice plant, a millet plant, a sorghum plant, or acombination thereof. In some preferred examples according to the presentdisclosure, the at least one fungal plant pathogen infects more than onetype of crop plant, for example, Sclerotinia sclerotiorum.

In some examples according to the present disclosure, the at least onefungal plant pathogen infects wheat and barley plants and causes scab,fusarium head blight, leaf rust including black, brown, and yellow rust,black stem rust, powdery mildew, canker, tan spot, flag smut, snowscald, leaf blotch, net blotch, alternaria leaf blight, ergot, blackpoint, eyespot, or a combination thereof. The at least one fungal plantpathogen that infects wheat and barley plants may be Fusariumgraminearum, F.avenaceum, F. poae, F.sporotrichioedes, Pucciniagraminis, Puccinia triticina, P. recondite, P. striiformis, Erysiphegraminis f.sp. Tritici, Glomerella graminicola (anamorph Colletotrichumgraminicola), Pyrenophora tritici-repentis (telomorph) and Drechsleratritici-repentis, Pyrenophora trichostoma, Urocystis agropyri,Sclerotinia borealis, Septoria spp., Stagnospora spp., Pyrenophora terestares, Pyrenophora teres maculate, Claviceps purpurea, Alternaria spp.,Heminthosporium spp, Psudocercosporella herpotrichoides, or acombination thereof.

In some examples according to the present disclosure, the at least onefungal plant pathogen infects corn plants and causes leaf blight andstalk rot, ear and kernel rot, leaf rust, black stem rust, black kernelrot, brown spot, grey leaf spot, Northern corn leaf spot, southern leafblight, white ear rot, root and stalk rot, southern rust, or acombination thereof. The at least one fungal plant pathogen that infectscorn plants may be Glomerella graminicola (anamorphic), Colletotrichumgraminicola, Fusarium verticillioides, Gibberella zeae, Aspergillusflavus, A. parasiticus, Lasiodiplodia theobromae, Physoderma maydis,Exserohilum turcicum, Cochliobolus heterostrophu, Cercospora zeae-maydisand Cercospora zeinaor, Cochliobolus carbonum, Stenocarpella maydis,Puccinia polysora, or a combination thereof.

In some examples according to the present disclosure, the at least onefungal plant pathogen infects rice plants and causes rice blast, brownspot, collar rot, eyespot, leaf scald, narrow brown leaf spot, rusts,white leaf streak, or a combination thereof. The at least one fungalplant pathogen that infects rice plants may be Magnaporthe oryzae,Cochliobolus miyabeanus, Ascochyta oryzae, Drechslera gigantean,Microdochium albescens, Cercospora oryzae, Puccinia graminis f.sp.oryzae, Uromyces coronatus, Ramularia oryzae, or a combination thereof.

In some examples according to the present disclosure, the at least onefungal plant pathogen infects millet plants and causes bipolaris leafspot, cercospora leaf spot, curvularia leaf spot, dactuliophora leafspot, drechslera leaf spot, ergot, exserohilum leaf blight, falsemildew, Head mold, myrothecium leaf spot, phyllosticta leaf blight,pyricularia leaf spot, rust, smut, southern blight, top rot, zonate leafspot, or a combination thereof. The at least one fungal plant pathogenthat infects millet plants may be Bipolaris setariae, Cercosporapenniseti, Curvularia penniseti, Dactuliophora elongata, Drechsleradematioidea, Claviceps fusiformis, Exserohilum rostratum, Beniowskiasphaeroidea, Myrothecium roridum, Phyllosticta penicillariae,Pyricularia grisea, Puccinia substriata, Moesziomyces penicillariae,Sclerotium rolfsii, Fusarium moniliforme, Gleocercospora sorghi, or acombination thereof.

In some examples according to the present disclosure, the at least onefungal plant pathogen infects sorghum plants and causes acremonium wilt,ergot, uematsu, fusarium head blight, root and stalk rot, grain storagemold, gray leaf spot, ladder leaf spot, leaf blight, milo disease(periconia root rot), oval leaf spot, pokkah boeng (twisted top), roughleaf spot, rust, southern sclerotial rot, sooty stripe, tar spot, targetleaf spot, zonate leaf spot and sheath blight, or a combination thereof.The at least one fungal plant pathogen that infects sorghum plants maybe Sarocladium strictum (syns Acremonium strictum), Cephalosporiumacremonium, Macrophomina phaseolina, Claviceps africana, Sphaceliasorghi, Fusarium spp., Fusarium moniliforme (syn. Gibberella fujikuroi),F. thapsinum (syn. G. thapsina), Aspergillus spp., Fusarium andiyazi, F.nygamai, Penicillium spp., Cercospora sorghi, Passalora fusimaculans(syn. Cercospora fusimaculans), Setosphaeria turcica (syns. Exserohilumturcicum, Helminthosporium turcicum), Periconia circinata, Ramulisporasorghicola, Gibberella fujikuroi (syns. Fusarium moniliforme var.subglutinans G. fujikuroi var. subglutinans, G. intermedia, F.proliferatum), Ascochyta sorghi, Puccinia purpurea, Sclerotium rolfsii(syn. Athelia rolfsii), Ramulispora sorghi, Phyllachora sacchari,Bipolaris sorghicola (syns. B. cookei, Helminthosporium cookei.),Gloeocercospora sorghi, or a combination thereof.

In the context of the present disclosure, reference to the fungal plantpathogen refers to its entire life cycle. For example, Sclerotiniasclerotiorum refers to the fungus, the produced sclerotium, and theproduced apothecia. Sclerotinia sclerotiorum can also be known ascottony rot, watery soft rot, stem rot, drop, crown rot and blossomblight.

The sample may be any medium in which one or more fungal plant pathogensmay reside and be capable of being recognized by at least one biologicalcomponent. In some examples according to the present disclosure, thesample is a solution.

The biological component is any compound that is capable of interactingwith, binding, and/or recognizing at least one fungal plant pathogen ina sample and is capable of coupling to at least one of theinterdigitated electrodes. The biological component may be an antibodyor fragment thereof. The antibody may be a polyclonal or a monoclonalantibody. In some preferred examples according to the presentdisclosure, the biological component is an antibody that recognizes andbinds Sclerotinia sclerotiorum. The antibody fragment thereof may be anantigen-binding (Fab) or a single-chain variable fragment. In someexamples according to the present disclosure, the biological componentrecognizes and binds to at least one fungal plant pathogen with adissociation constant (Kd) less than or equal to a micromolar (μM), forexample, a nanomolar (nM). Preferably, the biological componentrecognizes and specifically binds to at least one fungal plant pathogenwith a dissociation constant (Kd) less than a nanomolar (nM).

A skilled person would be able to produce an antibody that specificallybinds to at least one of the herein described fungal plant pathogens.Antibodies have been successfully produced in rabbits and rats againstfungal spores, for example, Mycosphaerella brassicicola (Kennedy andWakeham, 2002 New Methods for Detecting and Enumerating Fungal Spores ofPlant Pathogens. Plant Protect. Sci., 38 (Special Issue 1): 38-42;incorporated by reference), Glomus monosporum (Göbel, C., Hah,. A.,Hock, B., 1995. Production of polyclonal and monoclonal antibodiesagainst hyphae from arbuscular mycorrhizal fungi. Crit Rev Biotechnol.1995;15 (3-4):293-304; incorporated by reference), Clostridiumtyrobutyricum (Maria Lavilla , Ruth de Luis , Celia Conesa , Maria D.Pérez ,

Miguel Calvo & Lourdes Sánchez. 2008. Production of polyclonalantibodies against spores of Clostridium tyrobutyricum, a contaminantaffecting the quality of cheese: characterisation of the immunodominantprotein. Food and Agricultural Immunology 19 (1):77-91; incorporated byreference), and Aflatoxigenic Molds (R. Shapira et al., Development ofPolyclonal Antibodies for Detection of Aflatoxigenic Molds InvolvingCulture Filtrate and Chimeric Proteins Expressed in Escherichia coli.APPLIED AND ENVIRONMENTAL MICROBIOLOGY 63(3): 990-995; incorporated byreference), and Stachybotrys chartarum (Schmechel D & Lewis DM. 2001.The production of species-specific monoclonal antibodies

(Mabs) against the allergenic and toxigenic fungus Stachybotryschartarum. The FASEB Journal, Vol. 15(4), p. A662, Abstract # 523.1;incorporated by reference).

The support structure may be any solid semiconductor material that iscapable of serving as a substrate onto which at least two interdigitatedelectrodes can be coupled. In some examples according to the presentdisclosure, the support structure is a silicon wafer or a glasssubstrate.

At least one of the at least two interdigitated electrodes may be anycomb-shaped metallic conductor that is capable of coupling to at leastone fungal plant pathogen and is in electrical communication with atleast another of the at least two interdigitated electrodes. In someexamples according to the present disclosure, a pair of interdigitatedelectrodes may be orientated to interlock the fingers of theircomb-shapes. In the context of the present disclosure, in electricalcommunication refers to any connection that allows electrons to movebetween the at least two interdigitated electrodes, for example, acopper wire.

In some examples according to the present disclosure, at least one ofthe at least two interdigitated electrodes is a working electrode and atleast another of the at least two interdigitated electrodes is areference electrode or a counter electrode. The working electrode is anyelectrical conductor material that is capable of coupling to at leastone biological component that interacts with, binds, and/or recognizesat least one fungal plant pathogen. In some examples according to thepresent disclosure, the working electrode may be coupled to more thanone biological component that interacts with, binds, and/or recognizesat least one fungal plant pathogen. Each one of the more than onebiological component may interact with, bind, and/or recognize the samefungal plant pathogen or at least two of the more than one biologicalcomponent may interact with, bind, and/or recognize different fungalplant pathogens, for example, the working electrode may be coupled tobiological components that are capable of interacting with, binding,and/or recognizing 2, 3, 4, 5, 6, 7, 8, 9, or 10 different fungal plantpathogens. The reference electrode is any electrical conductor materialthat is capable of maintaining an approximately fixed, reproducibleelectrical potential between the electrode and the sample. The counterelectrode is any electrical conductor material that supplies a currentto the sample to maintain a desired electrode-solution voltage. In someexamples according to the present disclosure, the biosensor comprises aworking electrode, a reference electrode and a counter electrode. Insome examples according to the present disclosure, at least the workingelectrode is gold plated. In some examples according to the presentdisclosure, all of the electrodes are gold plated.

A working electrode capable of coupling to at least one biologicalcomponent that is capable of interacting with, binding, and/orrecognizing at least one fungal pathogen refers to any type of molecularassembly that immobilizes at least one biological component to theelectrode and orients the at least one biological component so that itcan interact with, bind, and/or recognize at least one fungal plantpathogen in a sample. Coupling to at least one biological componentrefers to any attachment that connects the working electrode to thebiological component and allows the biological component to interactwith, bind, and/or recognize at least one fungal pathogen in a sample,for example, by a linker. In some examples according to the presentdisclosure, the working electrode is functionalized with a linker thatis capable of coupling to at least one biological component. A skilledperson would understand that functionalizing an electrode refers toattaching functional components to the surface of the electrode. Thelinker may be a Self-Assembled Monolayer (SAM), a macromolecule, or athin layer of polymer.

The SAM may be any self-assembling monolayer where a portion of themonolayer is capable of coupling to the surface of the electrode andanother portion of the monolayer is capable of coupling to at least onebiological component. The backbone of the SAM may be an alkane, oligo(ethylene glycol), oligonucleotides, oligopeptides, amino acids(cysteine and methionine), linear polysaccharide (chitosan, hyaluronicacid). The functional groups of SAM may be thiol, silane, phosphonicacid, or carboxylic acid, for example, distal carboxylic acid. Thesegroups may form covalent bonds with gold or hydroxyl groups on theelectrode surface and provide an anchoring site for at least onebiological component, for example, distal carboxylic acid may covalentlyconjugate with an aminoalkyl-boronic acid or directly with an aminegroup (for example a lysine residue of the amine group) of an antibodyor fragment thereof that interacts with, binds, and/or recognizes atleast one fungal plant pathogen. In some examples according to thepresent disclosure wherein the working electrode is functionalized withSAM, the head group of the SAM binds to the working electrode and thefunctional group of the SAM binds to at least one biological componentthat interacts with, binds, and/or recognizes at least one fungal plantpathogen. In some examples according to the present disclosure, thefunctional group of the SAM is boronic acid, for example when increasingthe sensitivity and stability of the biosensor is desirable. Because ofthe size of ascospores, it may be desirable to specifically orient theat least one biological component that interacts with, binds, and/orrecognizes at least one fungal plant pathogen on the electrode to, forexample, increase the density of their paratopes free in the sample andavailable for binding to the ascospores. In some examples according tothe present disclosure, antibodies may be oriented approximately uprightwith respect to the SAM resulting in their paratopes facing thesolution, so that, for example, the antigens may have better access toat least one fungal plant pathogen in the solution and/or to increasethe density of the paratopes in the solution.

The thin layer polymer may be any polymer deposited on the surface ofthe electrode in situ by either chemical or electrochemical means suchthat a portion of the layer is capable of coupling to at least onebiological component. The polymer can bepoly[pyrrole-co-3-carboxyl-pyrrole], poly-(carboxybetaine methacrylate),polytyramine, poly (o-phenylenediamine), polytyramine, orterthiophene-carboxyl acid.

In some examples according to the present disclosure wherein the workingelectrode is functionalized with SAM, the working electrode may befunctionalized with a SAM coupled to at least one biological component,for example an antibody, that interacts with, binds, and/or recognizesat least one fungal plant pathogen by: (1) contacting the workingelectrode with an aqueous solution comprising 6-MHA and 11-MUA; (2)contacting working electrode with an aqueous solution comprising EDC andNHS; (2) contacting the working electrode with an aqueous solutioncomprising APBA; and (3) contacting the working electrode with asolution comprising at least one biological component that interactswith, binds, and/or recognizes at least one fungal plant pathogen. Insome examples according to the present disclosure, contacting theworking electrode with a solution refers to submerging at least aportion of the working electrode in the solution, for example,submerging a sufficiently large portion of the working electrode in thesolution so that the at least one biological component coupled to theworking electrode can interact with, bind, and/or recognize at least onefungal plant pathogen in the sample.

The inventors discovered that using a SAM with a boronic acid surfacegroup to link at least one antibody that interacts with, binds, and/orrecognizes at least one fungal plant pathogen to the electrode showed anincreased efficiency of binding ascospores compared to using PEG as alinker. Experimental results using alkane and PEG as the backbone of theSAM constituting the insulating layer in the sensor showed that theyhave a similar effect on the sensor impedance response and hence thesensor sensitivity. However, a combination of 11-Mercaptoundecanoic acid(MUA), and 16-Mercaptohexadecanoic acid (MDA) in the molar ratio of(10:1) as the SAM layer yielded an impedance response higher than thoseof the other SAMs that have been investigated. In some examplesaccording the present disclosure, a SAM with a boronic acid surfacegroup as a linker may be used instead of a SAM without a boronic acidsurface group as a linker, for example when increasing the efficiency ofascospore binding is desirable.

The: (1) number of fingers of each interdigitated electrode; (2) lengthof each finger; (3) width of each finger; (4) gap between adjacentinterdigitated fingers, and (5) thickness of each finger may be variedto alter the signal-to-noise ratio. In some examples according to thepresent disclosure, the finger length may be from about 0.1 mm to about5 mm, for example, 0.1 mm; 0.2 mm, 0.4 mm, 0.6 mm, 0.8 mm, 1.0 mm, 1.2mm, 1.4 mm, 1.6 mm, 1.8 mm, 2.0 mm, 2.2 mm, 2.4 mm, 2.6 mm, 2.8 mm, 3.0mm, 3.2 mm, 3.4 mm, 3.6 mm, 3.8 mm, 4.0 mm, 4.2 mm, 4.4 mm, 4.6 mm, 4.8mm, 5.0 mm, or the length is from any one of the lengths listed above toany other of the lengths listed above. In some examples according to thepresent disclosure, the width of each finger and/or the gap betweenadjacent interdigitated fingers may be varied to accommodate the size ofat least one plant fungal pathogen in the sample. In some examplesaccording to the present disclosure, the width of each finder and/or thegap between adjacent interdigitated fingers may be, independently, fromabout 2 μm to about 20 μm, for example, 2 μm, 3 μm, 4 μm, 5 μm, 6 μm, 7μm, 8 μm, 9 μm, 10 μm, 11 μm, 12 μm, 13 μm, 14 μm, 15 μm, 16 μm, 17 μm,18 μm, 19 μm, 20 μm, or the distance is from any one of the distanceslisted above to any other of the distances listed above. In someexamples according to the present disclosure, the length of the fingersand the number of finger pairs are decreased to increase the sensitivityof the electrode. In some examples according to the present disclosure,the fingers of a pair of interdigitated electrodes, together, make up anabout square shape. The about square shape may have a length and widthof from about 1 mm to about 50 mm, for example, about 1 mm; about 2 mm;about 3 mm; about 4 mm; about 5 mm; about 6 mm; about 7 mm; about 8 mm;about 9 mm; about 10 mm; about 15 mm; about 20 mm; about 25 mm; about 30mm; about 35 mm; about 40 mm; about 45 mm; or the distance is from anyone of the distances listed above to any other of the distances listedabove. In some examples according to the present disclosure, thethickness of each finger may be from about 25 nm to about 400 nm, forexample, about 25 nm; about 50 nm; about 75 nm; about 100 nm; about 110nm; about 125 nm; about 150 nm; about 175 nm; about 200 nm; about 250nm; about 300 nm; about 350 nm; about 400 nm; or the distance is fromany one of the thicknesses listed above to any other of the thicknesseslisted above. In some examples according to the present disclosure, theabout square shape has a length of about 3 mm, a width of about 3 mm, athickness of about 110 nm, and the gap between the fingers is about 3μm.

The interdigitated electrodes coupled to the support structure refers toany type of fastening of the electrodes to the support structure thatmaintains the electrodes' orientation on the support structure duringthe process of detecting at least one fungal plant pathogen. In someexamples according to the present disclosure, the electrodes arelaminated onto the support structure using a photolithography process.

An impedance measurement circuit is any voltage or current source andany voltage or current analyzer connected in an electrical path in whichelectrons may flow. In some examples according to the presentdisclosure, the impedance measurement circuit comprises a potentiostatin electrical communication with the at least two interdigitatedelectrodes.

Measuring the impedance refers to applying a current or voltageexcitation perturbation in an electrochemical cell and measuring thevoltage or the current response as a function of an applied excitationfrequency. Impedance is a measure of the opposition to the flow ofcurrent, arising from ion diffusion, electrode kinetics, redoxreactions, and molecular interactions at the electrode surface, when analternating excitation voltage is applied to the cell.

Without being limited by theory, it is believed that in the presentlydisclosed non-Faradaic based biosensor, contributions from theelectrolyte resistance and the interfacial capacitances dominate theimpedance of the system. The interfacial capacitances are sensitive tothe probe-analyte binding occurring on the surface of the electrode andcan be used for detection and quantification of target antigens. Thetotal capacitance (C_(tot)) of a sensor electrode may be considered as acombination of capacitances attributed to the SAM (C_(SAM)), recognitionlayer (C_(REC)), and double layer (C_(DL)) connected in series [12-20].

$\begin{matrix}{\frac{1}{C_{tot}} = {\frac{1}{C_{SAM}} + \frac{1}{C_{REC}} + \frac{1}{C_{DL}}}} & \left( {{Eq}.1} \right)\end{matrix}$

And the impedance is related to capacitance as:

$\begin{matrix}{{Z_{C} = \frac{1}{j\omega C}},} & \left( {{Eq}.2} \right)\end{matrix}$

where, ω=2πf, is the angular frequency and f is the applied frequency inhertz.

Due to the reciprocal nature of the relation, the total capacitance ofthe electrode/electrolyte interface is most sensitive to the changes inthe magnitude of the smallest capacitance in the series. As C_(DL) inaqueous solution is normally a large value [21, 22] on the order ofμF/cm², a sensitive impedance biosensor may be designed such that theC_(SAM) is also a large value, and C_(REC) is a small value [12-20].Therefore, surface modification and immobilization of the antibody mayplay a role in the development of a sensitive impedance based biosensor.

An impedance spectrum may be obtained by applying a current or voltageexcitation perturbation in an electrochemical cell, for example, abiosensor according to the present disclosure in a sample, and measuringthe voltage or the current response as a function of the appliedexcitation frequency.

In some examples according to the present disclosure, correlating thechange of impedance with the present and/or the amount of at least onefungal plant pathogen in the sample comprises correlating the change ofimpedance with a standard curve of known impedances of known amounts ofthe at least one fungal plant pathogen in the sample.

In some examples according to the present disclosure, the biosensors maybe in electrical communication with a processor that automates thedetection of at least one fungal plant pathogen. In some examplesaccording to the present disclosure, the biosensors may be coupled to ahigh throughput ascospore trap and used to forecast of the outbreak ofcrop plant infection. For example, in the case of Sclertonia stem rot,the threshold number of ascospore [4] in the air which allows an 8-dayadvanced forecasting of the outbreak of Sclerotinia stem rot is about 9ascospores/m³. By pre-concentrating the ascospores with a spore trap,the presently disclosed biosensors may be used for detecting andforecasting Sclerotinia stem rot outbreak and/or serving as an earlywarning system for the management and control of Sclerotinia stem rot ofcanola.

FIG. 1 illustrates an example of a biosensor according to the presentdisclosure. The biosensor (100) comprises: a support structure (102); atleast two interdigitated electrodes coupled to the support structure(104), wherein at least one of the interdigitated electrodes (104) isfunctionalized with a linker (106) coupled to a biological componentthat interacts with, binds, and/or recognizes at least one fungal plantpathogen (108); and an impedance measurement circuit coupled to the atleast two interdigitated electrodes (now shown). The at least twointerdigitated electrodes (104) each comprise two fingers (110).

FIG. 2 illustrates an example of surface functionalization steps and aprocess to achieve oriented immobilization of at least one antibody thatinteracts with, binds, and/or recognizes at least one fungal plantpathogen on the surface of at least one electrode. The first step in thefunctionalization of the gold surface of the IDE is the formation of aSAM with carboxylic acid end groups. Thiols with different chainlengths, viz 11-MUA and 6-MHA aqueous ethanol solution in molar ratio of1:10, may be used to form a SAM layer to reduce steric crowding of thesurface carboxylic acid end group. Treatment of the surface with EDC/NHSsolution may activate the carboxylic acid group by the formation of NHSester which can efficiently react with amino group of APBA to formsurface boronic acid group. Cyclic boronate esters may form when boronicacid reacts with the 1,2- or 1,3-diol group of the carbohydrate moietypresent in the fragment crystalizable region (Fc) of the antibody[8,9,10,11]. As the Fc region is located far away from the at least oneantibody binding sites and the boronate ester formation is specific tothe carbohydrate moiety, the immobilization reaction afforded by boronicacid functionalized electrode may provide a well oriented antibody withits paratopes facing the solution and readily available for efficientbinding with at least one fungal plant pathogen in a sample.

EXAMPLES Example 1-Materials and Reagents

1-Mercapto-11-undecanoic acid 97% (11-MUA), 1-Mercapto-6-hexanoic acid90% (6-MHA), N-(3-(dimethylamino)propyl)-N′-ethylcarbodiimidehydrochloride (EDC), N-hydroxysuccinimide 98% (NHS),3-3-aminophenylboronic acid monohydrate 98% (APBA), Ethanol (100%),disodium hydrogen phosphate, monosodium hydrogen phosphate, and bovineserum albumin 98% (BSA) were purchased from Sigma-Aldrich Canada Co.(Oakville, Ontario) and were used without further purification.Ultrapure water (18.2 MΩ/cm) obtained from Millipore equipment (Mili-Qwater) for sample preparation and washing.

Polyclonal anti-Sclerotinia sclerotiorum antibody was produced byCedarlane lab following a standard procedure from rabbits usingSclerotinia sclerotiorum as the antigen. Ascospores of Sclerotiniasclerotiorum were produced using a standard method (InnoTech Albertaaccession #184) by planting sclerotia, generated from sliced carrotroots, into a wet sand and incubating at 10° C. until the sclerotiagerminates to form apothecia. The ascospores released from the apotheciawere harvested by trapping onto a filter paper disc by applying vacuum.

Example 2-Gold IDE sensor chip and Polydimethylsiloxane (PDMS) mask

A custom designed IDE sensor chip, with digit parameters optimized fornanoparticle-enhanced impedimetric sensors [23], was fabricated on asilicon wafer with 500 nm thermal oxide following a standardphotolithography process flow involving sputter deposition of chromium(10 nm) and gold (100 nm), photoresist and photomask pattern transferfollowed by development, reactive ion etching and lift-off. Each of thesensor chips has eight 3 mm×3 mm square IDEs with digit length, width,thickness, and gap of 3 mm, 3 μm, 110 nm, and 3 μm respectively. Imagesof a typical sensor chip are displayed in FIGS. 3A and B.

To facilitate functionalization of the IDE surface without affectingother areas of the chip, a PDMS mask, as shown in FIG. 3B, with eightunits of 3 mm×3 mm square wells, designed to fit the IDEs on the sensorchip was custom designed and fabricated in the lab. The PDMS mask allowsindependent and localized modification of each IDE on a sensor chip withany desired modifying solutions.

Example 3-Protocols for Surface functionalization

The chips used for surface functionalization were cleaned by sonicatingfor about 5 minutes each in acetone, isopropanol, Millipore water (MPW)and then drying with a stream of nitrogen. The chips were then exposedto Argon plasma (1 Torr Ar atmosphere, 18 W high RF) for 5 minutes toablate any adsorbed organic materials on the surface. The freshlycleaned IDEs of the chip were functionalized in a sequence of successivereaction steps by submerging them in different solutions using the PDMSmask as presented in FIGS. 3A and B. After each functionalizationreaction step, the IDEs were washed with the solvents used to preparethe solutions including ethanol, 10 mM PBS at pH 7.4 and/or MPW toremove any chemicals not covalently bound to the surface.

The affinity of thiol with gold was utilized to form an insulatingself-assemble monolayer (SAM) with distal carboxylic acid group on thesurface of the IDEs. The reaction was carried out by submerging the IDEovernight at 4° C. in a 50 μL of 10 mM 6-MHA and 1 mM 11-MUA in 95%aqueous ethanol solution. After washing thoroughly with ethanol and MPW,the SAM modified IDEs were submerged in a 50 μL of 0.1 M EDC and 0.1 MNHS aqueous solution for 20 mins. The IDEs were washed and submerged ina 50 μL of 52 mM APBA solution (10 mM PBS at pH 7.4) for 3 hrs. Theboronic acid functionalized IDEs were submerged overnight in 50 μL of 5μg/ml anti-Sclerotinia sclerotiorum antibody buffered solutions (10 mMPBS at pH 7.4).

Example 4-Instruments

Electrochemical Impedance Spectroscopy (EIS) measurements were performedwith a potentiostat/galvanostat SP-200 controlled by EC lab softwarefrom BioLogic Scence Instruments Inc (Knoxville, Tenn.). A custom builtelectrical contact pad and connector, as shown in FIG. 3B, was used tomake electrical connections between SP-200 and the IDEs on the sensorchips. A PDMS mask with eight wells was used to submerse the IDEs of thesensor chip with 50 μL of 10 μM PBS at pH 7.4 for impedance spectrameasurements. Impedance spectra were measured by applying 10 mVsinusoidal excitation perturbation at 0 V DC in the frequency range of10 Hz to 1 MHz.

A digital optical microscope, VHX-700F from KEYENCE Canada Inc.(Mississauga, Ontario), was used for imaging and estimating the numberof ascospores captured on the surface of the IDEs. A Hemocytometer andMotic AE 31. The number of spores suspended in the solution and hencethe concentration was determined by using a Hemocytometer and aninverted Biological Microscope (Carlsbad, Calif.) combination. Themicroscope is used to visualize and count the number of spores in theHemocytometer which is a counting chamber containing the spore solutionof interest. The IDE sensors were incubated in solutions with knownspore concentrations determined above. The number of spores captured onthe IDE sensors were determined by a digital optical microscope,VHX-700F from KEYENCE Canada Inc. (Mississauga, Ontario).

Example 5-Impedance Spectra Illustrating Observed Impedance FollowingDifferent Stages of Making a Biosensor According to the PresentDisclosure

FIG. 4 shows the impedance spectra, the plots of the impedance magnitudeand phase versus frequency, of the applied sinusoidal excitationpotential (10 mV at 0 V DC) obtained for the interdigitated electrode(IDE) before modification (bare gold), after modification with SAM, andsubsequently after immobilization of anti-Sclerotinia sclerotiorumantibody. The impedance magnitude of a non-faradaic impedance spectrumis dominated by interface capacitance, solvent resistance, anddielectric capacitance in the low, intermediate, and high frequencyregion of the spectrum, respectively [24, 25]. As presented in FIG. 4 ,these regions of the spectrum are observed in the impedance spectra asexpected. It is important to note that the capacitance of the system isbetter represented by constant phase element as indicated by themagnitude of the phase angle in the low frequency region. As shown inFIG. 4 , modification of the bare gold IDE by SAM led to an increase inthe impedance, as expected for capacitances connected in series with thedouble layer, because the SAM layer is composed of low dielectric alkanechains [26]. A further increase in impedance, albeit a smaller changewas observed in the subsequent modification of the IDE surface with APBAand anti-Sclerotinia sclerotiorum antibody. To illustrate the observedimpedance change following different stages of the IDE surfacemodification, the magnitudes of the impedance recorded at 1000 Hz (inFIG. 4 ) are plotted in FIG. 5 .

The impedance change observed upon conjugation of APBA andanti-Sclerotinia sclerotiorum antibody to the covalently attached SAM asdisplayed in FIG. 4 indicates that the fabricated sensor has thesensitivity to detect the binding of antigens to the surface immobilizedantibodies. In the affinity based biosensors, a major source ofinterfering noise comes from nonspecific binding of biomolecules presentin the solution. Although, the nonspecific binding on the sensor surfacecan be greatly reduced by the formation of SAM layer on the IDE [27]further treatment of the surface with reagents such as a blocking agentis required to minimize their effects. In our biosensor, the IDE aftersurface modifications and anti-Sclerotinia sclerotiorum antibodyimmobilization was incubated with 2% BSA solution to minimizenonspecific binding prior to treatment with the target ascosporesolution.

FIGS. 6A-C show the optical microscopy images of the ascosporesselectively captured from ascospores in solution, via antigen-antibodyaffinity binding, by the immobilized antibodies on the surface of theIDE. The number of ascospores on the surfaces i.e. ascospores/cm² are(FIG. 6A) (1.1±0.1)×105, (FIG. 6B) (4.4±0.4)×104, and (FIG. 6C)(2.5±0.3)×104. Scale bar equals 100 μm. It is important to note that theascospores captured by the immobilized antibodies on the surface of theIDE are unaffected by repeated washing, indicating suitability of theboronic ester bond for antibody immobilization [8, 9, 10, 11]. As theellipsoidal shaped ascospore has a size in the range, 4-6 μm×9-14 μm[28], a digital optical microscope was used in this work as a techniqueto verify the efficacy of the protocol used to capture ascospores by theimmobilized antibodies.

The microscopic images were also used for determining the number ofascospores captured on the IDE surface and to correlate theircontributions to the impedance response. As shown in FIGS. 6A-C , theestimated number of ascospores in the representative images correspondto about 9700, 4000 and 2300 ascospores captured on the surfaces of 3mm×3 mm IDEs in sensor chip. The numbers or concentrations of ascosporesin the solution were determined by using a hemocytometer. From theconcentration of ascospores in the solution and the observed numberascospores captured on the surface of the IDE, the inventors havedetermined that the antibody-target antigen binding proceeds with highefficiency and most of the ascospores present in the solution capturedon the surface of the IDE.

Example 6-Impedance Based Biosensor Is Suitable For Sensitive Detectionof Ascospores

FIG. 7 shows the plot of impedance change (ΔZ) versus ascosporesconcentration [ascospore] in the incubation solution. The black line isthe linear fit to the experimental data point (filled squares), errorbars are RSD (n=4). Where, ΔZ=Z_(Ab-Sp)−Z_(Ab), and Z_(Ab) and Z_(Ab-Sp)are the magnitudes of the impedance measured at 1000 Hz before and afterthe ascospores have been captured by the immobilized anti-Sclerotiniasclerotiorum antibodies on the surface of modified IDE.

The impedance change (ΔZ) at any given ascospore concentration wascalculated from the impedance spectra of an IDE recorded before (Z_(Ab))and after (Z_(Ab-Sp)) the capture of the ascospores by the immobilizedanti-Sclerotinia sclerotiorum antibodies on the surface offunctionalized IDE. Binding of the ascospores on the IDE surface led toa decrease in impedance magnitude, thereby yielding a negative value forthe impedance change, ΔZ=Z_(Ab-Sp)−Z_(Ab), calculated from the impedancemagnitude at the applied sinusoidal AC frequency of 1000 Hz. Asdemonstrated by the experimental data plotted in FIG. 7 , the impedancemagnitude decreases with increase in the number of bound ascospores onthe surface of the IDE.

The change in the magnitude of impedance in a capacitive based sensordue to affinity binding of target antigens to the surface immobilizedantibodies can arise from the dielectric properties of the targetantigens, the displacement of water molecules due the target binding,and the change in the thickness of the recognition layer [12-21]. Thesechanges contribute to impedance change via the capacitance of therecognition layer (C_(REC)) in the biosensor.

A unique advantage of working with ascospores is their size [28] (4-6μm×9-14 μm) which allowed us to confirm the selective capture ofascospores on the sensor surface using optical microscope (FIGS. 6A-C).Further, the optical images were used to estimate the number ascosporescaptured on the IDE surface which in turn is related to theconcentration of ascospores in the incubation solutions and theseconcentration values were plotted as shown in FIG. 7 . Hence, theseresults allowed the inventors to obtain a direct and unambiguouscorrelation between the number of selectively captured ascospores andtheir impedance response.

The experimental data in FIG. 7 can be fitted with a linear regression(R²=93%) to yield a slope of 6.5 ohms/aM ascosproes in the solution. Thelimit of detection (LOD) evaluated from the signal-to-noise ratiodetermined from the standard deviations of the negative controls wasabout 130 aM.

In the preceding description, for purposes of explanation, numerousdetails are set forth in order to provide a thorough understanding ofthe embodiments. However, it will be apparent to one skilled in the artthat these specific details are not required. In other instances,well-known electrical structures and circuits are shown in block diagramform in order not to obscure the understanding. For example, specificdetails are not provided as to whether the embodiments described hereinare implemented as a software routine, hardware circuit, firmware, or acombination thereof.

The above-described embodiments are intended to be examples only.Alterations, modifications and variations can be effected to theparticular embodiments by those of skill in the art. The scope of theclaims should not be limited by the particular embodiments set forthherein, but should be construed in a manner consistent with thespecification as a whole.

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What is claimed is:
 1. A biosensor for detecting the presence of and/orthe amount of at least one fungal plant pathogen in a sample,comprising: a support structure; at least two interdigitated electrodescoupled to the support structure, wherein at least one of the at leasttwo interdigitated electrodes is functionalized with a linker comprisinga boronic acid functional group coupled to at least one antibody orfragment thereof that recognizes the at least one fungal plant pathogen;and an impedance measurement circuit coupled to the at least twointerdigitated electrodes, wherein the at least one antibody or fragmentthereof specifically binds at least one fungal plant pathogen thatinfects a canola plant, a wheat plant, a barley plant, a corn plant, arice plant, a millet plant, a sorghum plant, or a combination thereof,or Fusarium graminearum, F.avenaceum, F. poae, F.sporotrichioedes,Puccinia spp., Puccinia triticina, P. recondite, P. striiformis,Erysiphe graminis fsp. tritici, Glomerella graminicola (anamorphColletotrichum graminicola), Pyrenophora tritici-repentis (telomorph)and Drechslera tritici-repentis, Pyrenophora trichostoma, Urocystisagropyri, Sclerotinia borealis, Septoria spp., Stagnospora spp.Parastagonospora nodorum, Pyrenophora spp. teres tares, Pyrenophorateres maculate, Claviceps purpurea, Alternaria spp., Heminthosporiumspp, Pseudocercosporella herpotrichoides, Glomerella graminicola(anamorphic), Colletotrichum graminicola, Fusarium verticillioides,Gibberella zeae, Aspergillus flavus, A. parasiticus, Lasiodiplodiatheobromae, Physoderma maydis, Exserohilum turcicum, Cochliobolusheterostrophuspp, Cercospora zeae-maydis and Cercospora zeinaor,Cochliobolus carbonum, Stenocarpella maydis, Puccinia polysora,Magnaporthe oryzae, Cochliobolus miyabeanus, Ascochyta oryzae,Drechslera gigantean, Microdochium albescens, Cercospora oryzae,Puccinia graminis f.sp. oryzae, Uromyces coronatus, Ramularia oryzae,Bipolaris setariae, Cercospora penniseti, Curvularia penniseti,Dactuliophora elongata, Drechslera dematioidea, Claviceps fusiformis,Exserohilum rostratum, Beniowskia sphaeroidea, Myrothecium roridum,Phyllosticta penicillariae, Pyricularia grisea, Puccinia substriata,Moesziomyces penicillariae, Sclerotium rolfsii, Gleocercospora sorghi,Sarocladium strictum (syns Acremonium strictum), Cephalosporiumacremonium, Macrophomina phaseolina, Claviceps africana, Sphaceliasorghi, Fusarium spp. moniliforme (syn. Gibberella fujikuroi), F.thapsinum (syn. G. thapsina), Aspergillus spp., Fusarium andiyazi, F.nygamai, Penicillium spp., Cercospora sorghi, Passalora fusimaculans(syn. Cercospora fusimaculans), Setosphaeria turcica (syns. Exserohilumturcicum, Helminthosporium spp. turcicum), Periconia circinata,Ramulispora sorghicola, Gibberella fujikuroi (syns. Fusarium moniliformevar. subglutinans G. fujikuroi var. subglutinans, G. intermedia, F.proliferatum), Ascochyta sorghi, Puccinia purpurea, Sclerotium rolfsii(syn. Athelia rolfsii), Ramulispora sorghi, Phyllachora sacchari,Bipolaris sorghicola (syns. B. cookei, Helminthosporium cookei.),Gloeocercospora sorghi, or any combination thereof.
 2. The biosensor ofclaim 1, wherein the at least one antibody or fragment thereofspecifically binds a spore of the at least one fungal plant pathogen orat least one airborne ascospore or conidiospore released from theapothecia.
 3. The biosensor of claim 1, wherein the linker is a SAM, amacromolecule, or a thin layer of polymer.
 4. The biosensor of claim 3,wherein the linker is a SAM that comprises a thiol head group.
 5. Thebiosensor of claim 1, wherein fingers of a pair of interdigitatedelectrodes, arranged together in an array, have an about square shape.6. The biosensor of claim 1, wherein the biosensor is a non-faradaicbiosensor.
 7. The biosensor of claim 1, coupled to an ascospore trap. 8.A method of making a biosensor for detecting the presence of and/or theamount of at least one fungal plant pathogen in a sample, comprising:contacting an interdigitated electrode with an aqueous solutioncomprising a linker, the interdigitated electrode being in electricalcommunication with at least a second interdigitated electrode;contacting the interdigitated electrode with an aqueous solutioncomprising EDC and NHS; contacting the interdigitated electrode with anaqueous solution comprising APBA; and contacting the interdigitatedelectrode with a solution comprising at least one antibody or fragmentthereof that specifically binds at least one fungal plant pathogen thatinfects a canola plant, a wheat plant, a barley plant, a corn plant, arice plant, a millet plant, a sorghum plant, or a combination thereof,or Fusarium graminearum, F.avenaceum, F. poae, F. sporotrichioedes,Puccinia spp., Puccinia triticina, P. recondite, P. striiformis,Erysiphe graminis fsp. tritici, Glomerella graminicola (anamorphColletotrichum graminicola), Pyrenophora tritici-repentis (telomorph)and Drechslera tritici-repentis, Pyrenophora trichostoma, Urocystisagropyri, Sclerotinia borealis, Septoria spp., Stagnospora spp.Parastagonospora nodorum, Pyrenophora spp. teres tares, Pyrenophorateres maculate, Claviceps purpurea, Alternaria spp., Heminthosporiumspp, Pseudocercosporella herpotrichoides, Glomerella graminicola(anamorphic), Colletotrichum graminicola, Fusarium verticillioides,Gibberella zeae, Aspergillus flavus, A. parasiticus, Lasiodiplodiatheobromae, Physoderma maydis, Exserohilum turcicum, Cochliobolusheterostrophuspp, Cercospora zeae-maydis and Cercospora zeinaor,Cochliobolus carbonum, Stenocarpella maydis, Puccinia polysora,Magnaporthe oryzae, Cochliobolus miyabeanus, Ascochyta oryzae,Drechslera gigantean, Microdochium albescens, Cercospora oryzae,Puccinia graminis f.sp. oryzae, Uromyces coronatus, Ramularia oryzae,Bipolaris setariae, Cercospora penniseti, Curvularia penniseti,Dactuliophora elongata, Drechslera dematioidea, Claviceps fusiformis,Exserohilum rostratum, Beniowskia sphaeroidea, Myrothecium roridum,Phyllosticta penicillariae, Pyricularia grisea, Puccinia substriata,Moesziomyces penicillariae, Sclerotium rolfsii, Gleocercospora sorghi,Sarocladium strictum (syns Acremonium strictum), Cephalosporiumacremonium, Macrophomina phaseolina, Claviceps africana, Sphaceliasorghi, Fusarium spp. moniliforme (syn. Gibberella fujikuroi), F.thapsinum (syn. G. thapsina), Aspergillus spp., Fusarium andiyazi, F.nygamai, Penicillium spp., Cercospora sorghi, Passalora fusimaculans(syn. Cercospora fusimaculans), Setosphaeria turcica (syns. Exserohilumturcicum, Helminthosporium spp. turcicum), Periconia circinata,Ramulispora sorghicola, Gibberella fujikuroi (syns. Fusarium moniliformevar. subglutinans G. fujikuroi var. subglutinans, G. intermedia, F.proliferatum), Ascochyta sorghi, Puccinia purpurea, Sclerotium rolfsii(syn. Athelia rolfsii), Ramulispora sorghi, Phyllachora sacchari,Bipolaris sorghicola (syns. B. cookei, Helminthosporium cookei.),Gloeocercospora sorghi, or any combination thereof.
 9. The method ofclaim 8, wherein the at least one antibody or fragment thereofspecifically binds a spore of the at least one fungal plant pathogen orat least one airborne ascospore or conidiospore released from theapothecia.
 10. The method of claim 8, further comprising the step of:applying a PDMS mask to the interdigitated electrode.
 11. The method ofclaim 8, wherein the linker is a SAM that comprises a thiol head groupand optionally, a boron functional group, a macromolecule, a thin layerof polymer, or 6-MHA and 11-MUA.
 12. The method of claim 8, wherein thebiosensor is the biosensor of claim
 1. 13. A method of detecting thepresence of and/or the amount of at least one fungal plant pathogen in asample, comprising: measuring the impedance of a biosensor coupled to atleast one antibody or fragment thereof that specifically binds at leastone fungal plant pathogen that infects a canola plant, a wheat plant, abarley plant, a corn plant, a rice plant, a millet plant, a sorghumplant, or a combination thereof, or Fusarium graminearum, F.avenaceum,F. poae, F.sporotrichioedes, Puccinia spp., Puccinia triticina, P.recondite, P. striiformis, Erysiphe graminis f.sp. tritici, Glomerellagraminicola (anamorph Colletotrichum graminicola), Pyrenophoratritici-repentis (telomorph) and Drechslera tritici-repentis,Pyrenophora trichostoma, Urocystis agropyri, Sclerotinia borealis,Septoria spp., Stagnospora spp. Parastagonospora nodorum, Pyrenophoraspp. teres tares, Pyrenophora teres maculate, Claviceps purpurea,Alternaria spp., Heminthosporium spp, Pseudocercosporellaherpotrichoides, Glomerella graminicola (anamorphic), Colletotrichumgraminicola, Fusarium verticillioides, Gibberella zeae, Aspergillusflavus, A. parasiticus, Lasiodiplodia theobromae, Physoderma maydis,Exserohilum turcicum, Cochliobolus heterostrophuspp, Cercosporazeae-maydis and Cercospora zeinaor, Cochliobolus carbonum, Stenocarpellamaydis, Puccinia polysora, Magnaporthe oryzae, Cochliobolus miyabeanus,Ascochyta oryzae, Drechslera gigantean, Microdochium albescens,Cercospora oryzae, Puccinia graminis f.sp. oryzae, Uromyces coronatus,Ramularia oryzae, Bipolaris setariae, Cercospora penniseti, Curvulariapenniseti, Dactuliophora elongata, Drechslera dematioidea, Clavicepsfusiformis, Exserohilum rostratum, Beniowskia sphaeroidea, Myrotheciumroridum, Phyllosticta penicillariae, Pyricularia grisea, Pucciniasubstriata, Moesziomyces penicillariae, Sclerotium rolfsii,Gleocercospora sorghi, Sarocladium strictum (syns Acremonium strictum),Cephalosporium acremonium, Macrophomina phaseolina, Claviceps africana,Sphacelia sorghi, Fusarium spp. moniliforme (syn. Gibberella fujikuroi),F. thapsinum (syn. G. thapsina), Aspergillus spp., Fusarium andiyazi, F.nygamai, Penicillium spp., Cercospora sorghi, Passalora fusimaculans(syn. Cercospora fusimaculans), Setosphaeria turcica (syns. Exserohilumturcicum, Helminthosporium spp. turcicum), Periconia circinata,Ramulispora sorghicola, Gibberella fujikuroi (syns. Fusarium moniliformevar. subglutinans G. fujikuroi var. subglutinans, G. intermedia, F.proliferatum), Ascochyta sorghi, Puccinia purpurea, Sclerotium rolfsii(syn. Athelia Ramulispora sorghi, Phyllachora sacchari, Bipolarissorghicola (syns. B. cookei, Helminthosporium cookei.), Gloeocercosporasorghi, or any combination thereof; contacting the sample with thebiosensor; measuring the impedance of the biosensor in contact with thesample; and correlating the change of impedance with the presence and/orthe amount of the at least one fungal plant pathogen in the sample. 14.The method of claim 13, wherein the at least one antibody or fragmentthereof specifically binds a spore of the at least one fungal plantpathogen or at least one airborne ascospore or conidiospore releasedfrom the apothecia.
 15. The method of claim 13, wherein the correlatingstep comprises correlating the change of impedance with a standard curveof known impedances of known amounts of the at least one fungal plantpathogen.
 16. The method of claim 13, wherein the impedances aremeasured by applying about 10 mV sinusoidal excitation perturbation at 0V DC in a frequency range from about 10 Hz to about 1 MHz.
 17. Themethod of claim 13, wherein the at least one fungal plant pathogen isthe apothecia of the at least one fungal plant pathogen or at least oneairborne ascospore or conidiospore released from the apothecia.
 18. Themethod of claim 13, wherein the sample is captured in a high throughputascospore trap.
 19. The method of claim 13, wherein the biosensor is thebiosensor of claim 1.